Skip to main content

Table 1 Time (s), recall (%), and precision (%) for aligning reads with different error rates.

From: ARYANA: Aligning Reads by Yet Another Approach

 

1% error

2% error

4% error

6% error

 

T(s)

R(%)

P(%)

T(s)

R(%)

P(%)

T(s)

R(%)

P(%)

T(s)

R(%)

P(%)

ARYANA

469

99.06

92.74

664

98.76

92.46

869

97.64

91.37

933

95.45

88.93

SeqAlto

507

93.12

98.55

562

93.07

98.54

945

89.29

98.85

3320

61.59

99.39

Bowtie2

1358

92.73

98.17

1349

92.23

97.71

1217

90.10

96.69

1066

83.73

95.63

BWA

2509

93.04

98.46

2338

92.84

98.24

2046

91.69

97.15

1773

88.25

95.11

  1. For each test case, a data set including 1 million 200 bp single simulated Illumina reads was processed.