Table 3 squeezambler results for the three setups summarized in Table 2.
From: Ensemble analysis of adaptive compressed genome sequencing strategies
Setup | Method | Total Sequencing (Gbps) | Max Barcodes | No. of Predicted distinct genomes | Iterations |
|---|---|---|---|---|---|
31 cells; 6 distinct genomes | Naïve | 4 | 31 | 6 | 1 |
| Â | squeezambler 1.1, BFS | 13.8 | 10 | 6 | 5 |
| Â | squeezambler 2.0, BFS | 11.2 | 8 | 5 | 5 |
| Â | squeezambler 2.0, DFS | 11 | 2 | 6 | 12 |
59 cells; 4 distinct genomes | naïve | 8 | 59 | 4 | 1 |
| Â | squeezambler 1.1, BFS | 10 | 4 | 4 | 6 |
| Â | squeezambler 2.0, BFS | 8.7 | 4 | 4 | 6 |
| Â | squeezambler 2.0, DFS | 8.8 | 2 | 4 | 9 |
140 cells; 4 distinct genomes | naïve | 18.5 | 140 | 4 | 1 |
| Â | squeezambler 2.0, DFS | 10.3 | 2 | 4 | 10 |