From: SWAP-Assembler: scalable and efficient genome assembly towards thousands of cores
Assembler | Cores | S. aureus | R. sphaeroides | Hg14 |
---|---|---|---|---|
Velvet | 1 | 159 | 265 | 5432 |
SOAPdenovo | 4 | 44 | 71 | 1004 |
 | 8 | 44 | 69 | 933 |
 | 16 | 36 | 57 | 742 |
 | 32 | 38 | 45 | 584 |
Pasha | 4 | 215 | 342 | 5494 |
 | 8 | 159 | 255 | 3938 |
 | 16 | 147 | 255 | 3436 |
 | 32 | 183 | 289 | 4852 |
ABySS | 4 | 174 | 302 | 4138 |
 | 8 | 146 | 234 | 3079 |
 | 16 | 139 | 226 | 2588 |
 | 32 | 147 | 235 | 2596 |
Ray | 4 | 1247 | 1778 | 24145 |
 | 8 | 707 | 1050 | 13116 |
 | 16 | 454 | 688 | 7222 |
 | 32 | 351 | 467 | 4235 |
SWAP-Assembler | 4 | 81 | 129 | 2167 |
 | 8 | 42 | 69 | 1187 |
 | 16 | 24 | 38 | 685 |
 | 32 | 13 | 21 | 408 |