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Table 4 Time usage results of three small datasets on a share memory machine with 32 cores.

From: SWAP-Assembler: scalable and efficient genome assembly towards thousands of cores

Assembler

Cores

S. aureus

R. sphaeroides

Hg14

Velvet

1

159

265

5432

SOAPdenovo

4

44

71

1004

 

8

44

69

933

 

16

36

57

742

 

32

38

45

584

Pasha

4

215

342

5494

 

8

159

255

3938

 

16

147

255

3436

 

32

183

289

4852

ABySS

4

174

302

4138

 

8

146

234

3079

 

16

139

226

2588

 

32

147

235

2596

Ray

4

1247

1778

24145

 

8

707

1050

13116

 

16

454

688

7222

 

32

351

467

4235

SWAP-Assembler

4

81

129

2167

 

8

42

69

1187

 

16

24

38

685

 

32

13

21

408

  1. (Time unit: seconds)