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Table 8 Contig statistics on the assembly results of S.aureus, R. sphaeroides datasets. (Unit: Percentage %).

From: SWAP-Assembler: scalable and efficient genome assembly towards thousands of cores

Dataset

Software

Assembly

Chaff

Unalign

Unalign

Duplicate

Compress

 

Size

Size

Ref bases

ASM bases

Ref bases

Ref bases

S. aureus

Velvet

99.2

0.45

0.79

0.03

0.1

1.28

(2.9 Mb)

SOAPdenovo

101.3

0.35

0.38

0.01

1.44

1.41

 

ABySS

127

66

1.37

< 0.01

23.3

0.99

 

Ray

98.4

0.1

0.88

0.04

0.08

1.26

 

SWAP-Assembler

99.3

0.28

0.8

0.02

1.29

1.45

 

Velvet

97.8

0.54

1.6

0.01

0.29

0. 92

 

SOAPdenovo

99.9

0.45

0.88

0.02

1.07

0.51

R. sphaeroides (4.6 Mb)

ABySS

108

1.65

3.01

0.15

10.04

0.04

 

Ray

99

0.13

1.03

< 0.01

0.27

0.73

 

SWAP-Assembler

99.1

0.13

1.08

0.11

0.83

0.75