From: SWAP-Assembler: scalable and efficient genome assembly towards thousands of cores
Dataset | Software | Assembly | Chaff | Unalign | Unalign | Duplicate | Compress |
---|---|---|---|---|---|---|---|
 | Size | Size | Ref bases | ASM bases | Ref bases | Ref bases | |
S. aureus | Velvet | 99.2 | 0.45 | 0.79 | 0.03 | 0.1 | 1.28 |
(2.9 Mb) | SOAPdenovo | 101.3 | 0.35 | 0.38 | 0.01 | 1.44 | 1.41 |
 | ABySS | 127 | 66 | 1.37 | < 0.01 | 23.3 | 0.99 |
 | Ray | 98.4 | 0.1 | 0.88 | 0.04 | 0.08 | 1.26 |
 | SWAP-Assembler | 99.3 | 0.28 | 0.8 | 0.02 | 1.29 | 1.45 |
 | Velvet | 97.8 | 0.54 | 1.6 | 0.01 | 0.29 | 0. 92 |
 | SOAPdenovo | 99.9 | 0.45 | 0.88 | 0.02 | 1.07 | 0.51 |
R. sphaeroides (4.6 Mb) | ABySS | 108 | 1.65 | 3.01 | 0.15 | 10.04 | 0.04 |
 | Ray | 99 | 0.13 | 1.03 | < 0.01 | 0.27 | 0.73 |
 | SWAP-Assembler | 99.1 | 0.13 | 1.08 | 0.11 | 0.83 | 0.75 |