Table 9 Contig statistics of Hg14, Fish and Yanhuang datasets.
From: SWAP-Assembler: scalable and efficient genome assembly towards thousands of cores
Dataset | Software | Contigs | |||
|---|---|---|---|---|---|
| Â | Num | N50 (bp) | Max (bp) | BasesInContig (Mbp) | |
| Â | Velvet | 90,784 | 1688 | 25,729 | 83.3 |
Hg 14 (88.3 Mb) | SOAPdenovo | 200,153 | 836 | 21,144 | 96.4 |
| Â | ABySS | 190,693 | 1914 | 26,697 | 107.4 |
| Â | Ray | 76,950 | 964 | 14,399 | 68.4 |
| Â | SWAP-Assembler | 88,609 | 2036 | 21,246 | 96.4 |
Fish (1 Gb) | Velvet | - | - | - | - |
| Â | SOAPdenovo | 3291290 | 378 | 7181 | 1,134.40 |
| Â | ABySS | - | - | - | - |
| Â | Ray | - | - | - | - |
| Â | SWAP-Assembler | 2881443 | 1309 | 35,962 | 1,097.90 |
| Â | Velvet | - | - | - | - |
Yanhuang (3 Gb) | SOAPdenovo | 8,584,515 | 841 | 23,782 | 3396.2 |
| Â | ABySS | 9,218,967 | 1059 | 24,428 | 3691.8 |
| Â | Ray | 3,755,103 | 266 | 6,765 | 1620.1 |
| Â | SWAP-Assembler | 2,379,151 | 1368 | 31,152 | 2434.3 |