Table 3 Simulation results on the assembly of real/synthetic genomes using reads corrupted by indel noise(Synthetic: randomly generated to fit ${\tilde{\ell }}_{\mathsf{\text{max}}}$, ${\tilde{\ell }}_{\mathsf{\text{crit}}}$, ℓ_crit; (a) : Prochlorococcus marinus ; (b): Helicobacter pylori)

Type

G

p _i

p _d

${\tilde{\ell }}_{\mathsf{\text{crit}}}$

L

$\frac{NL}{G}$

${\tilde{\ell }}_{\mathsf{\text{max}}}$

ℓ_crit

${\tilde{\ell }}_{\mathsf{\text{crit}}}$

$\frac{N}{N_{noiseless}}$

Rate