coverage | time (sec) | |R|(M) | |FP 4|(K) | |FN |(M) | BF size (MB) | FP4 size (MB) | FN size (MB) | compression bits/base |
---|
10 | 410 | 6.3 | 3.7 | 2.0 | 8.5 | 0.38 | 36.8 | 0.58 |
20 | 590 | 12.6 | 6.8 | 4.4 | 14.2 | 0.68 | 66.8 | 0.52 |
30 | 800 | 18.9 | 9.3 | 7.1 | 19.0 | 0.94 | 93.8 | 0.48 |
40 | 1006 | 25.2 | 20 | 10.2 | 22.8 | 2.01 | 119.0 | 0.46 |
50 | 1220 | 31.5 | 16 | 13.5 | 26.4 | 1.66 | 143.0 | 0.43 |
- Reads were simulated from hg19 chromosome 20 with 100 bp single end reads. A mutation rate of 0.001 was used along with 0-0.005 per base error rate along the length of each read. Run times include additional compression steps performed by SCALCE and 7zip in single thread mode. R - the read set. FP4 - the final false positive set. FN - the set of reads not encoded by the BFs.