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Table 2 Program parameters used in compression tool comparison (Figure 3)

From: Fast lossless compression via cascading Bloom filters

Program

Parameters

dwgsim

-C coverage level -H -e 0.0-0.005 -R 0.0 -1 read length -2 0 -y 0.0

bowtie2

-x chr20 -U input fastq -S

SCALCE

input fastq -T 1 -A -n library -o output prefix

quip (default)

-o=quip -i=sam input sam

quip (reference)

-o=quip -r ref fa -i=sam input sam

fastqz (default)

c input fastq output prefix

fastqz (reference)

c input fastq output prefix r packed ref file

BRC

rec load bf -err rate 0 -e 0 -i 4 reads file packed ref file