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Table 5 Independent testing performance for single HMM and MDD-clustered HMMs.

From: Characterization and identification of ubiquitin conjugation sites with E3 ligase recognition specificities

Models

SEN

SPE

ACC

MCC

Single HMM (all data)

63.54%

60.12%

61.30%

0.225

MDD-Model 1

70.16%

66.61%

67.83%

0.351

MDD-Model 2

87.70%

70.47%

76.41%

0.553

MDD-Model 3

74.78%

67.70%

70.14%

0.405

MDD-Model 4

63.27%

57.35%

59.39%

0.196

MDD-Model 5

52.74%

62.13%

58.90%

0.143

MDD-Model 6

77.50%

70.12%

72.66%

0.454

MDD-Model 7

71.66%

60.22%

64.16%

0.303

MDD-Model 8

65.17%

60.57%

62.16%

0.245

MDD-Model 9

68.07%

59.14%

62.22%

0.259

MDD-Model 10

70.65%

67.14%

68.35%

0.360

MDD-clustered HMMs

87.76%

70.02%

76.13%

0.549