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Table 5 Performance (average r2) of rrBLUP for the single marker model (Formula 1) and epistasis model (Formula 2) under the traditional encoding vs. the data-driven encoding.

From: Data-driven encoding for quantitative genetic trait prediction

Dent

Phenotype

rrBLUP (T)

rrBLUP (D)

Epistasis (T)

Epistasis (D)

1

0.590

0.616

0.590

0.616

2

0.552

0.58

0.552

0.58

3

0.321

0.349

0.356

0.349

Flint

Phenotype

rrBLUP (T)

rrBLUP (D)

Epistasis (T)

Epistasis (D)

1

0.470

0.492

0.476

0.493

2

0.301

0.308

0.316

0.312

3

0.057

0.068

0.096

0.102

  1. rrBLUP (T) is the single marker model under the traditional encoding. rrBLUP (D) is the single marker model under the data-driven encoding. Epistasis (T) is the epistasis model under the traditional encoding. Epistasis (D) is the epistasis model under the data-driven encoding.
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BMC Bioinformatics

ISSN: 1471-2105

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