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Table 5 Performance (average r2) of rrBLUP for the single marker model (Formula 1) and epistasis model (Formula 2) under the traditional encoding vs. the data-driven encoding.

From: Data-driven encoding for quantitative genetic trait prediction

Dent
Phenotype rrBLUP (T) rrBLUP (D) Epistasis (T) Epistasis (D)
1 0.590 0.616 0.590 0.616
2 0.552 0.58 0.552 0.58
3 0.321 0.349 0.356 0.349
Flint
Phenotype rrBLUP (T) rrBLUP (D) Epistasis (T) Epistasis (D)
1 0.470 0.492 0.476 0.493
2 0.301 0.308 0.316 0.312
3 0.057 0.068 0.096 0.102
  1. rrBLUP (T) is the single marker model under the traditional encoding. rrBLUP (D) is the single marker model under the data-driven encoding. Epistasis (T) is the epistasis model under the traditional encoding. Epistasis (D) is the epistasis model under the data-driven encoding.
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