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Table 3 The hydrophobic core of the light harvesting polypeptide.

From: SCMPSP: Prediction and characterization of photosynthetic proteins based on a scoring card method

Name

sequence

reference

Propensity score

LH1-b

VYMSGLWLFSAVAIVAHLAVYIW

[54]

554.77

LH-a

ALVGLATFLFVLALLIHFILLST

[54]

518.91

Cut-a

ALVGLATFLFVLALLIHFILLST

[54]

518.91

Type1

ALVGLATFLFVLALLIHFILLST

[54]

518.91

LH-b

IFTSSILVFFGVAAFAHLLVWIW

[55]

604.77

  1. The mean score of 400 dipeptide propensity is 420.27 and the threshold of the SCMPSP classifier is 441.29.
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BMC Bioinformatics

ISSN: 1471-2105

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