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Table 7 The amino acids scores derived from SCMPSP and physicochemical properties selected by SCM-PCPs.

From: SCMPSP: Prediction and characterization of photosynthetic proteins based on a scoring card method

Amino acid PS protein
Score (Rank)
1BLAS910101 Score (Rank) 2WOLR810101 Score (Rank) 3PUNT030101 Score (Rank)
A-Ala 522.9 (1) 0.62 (10) 1.95 (5) -0.17 (15)
F-Phe 516.7 (2) 1.00 (1) -0.76 (6) -0.41 (20)
Y-Tyr 498.9 (3) 0.88 (4) -6.11 (13) -0.09 (13)
I-Ile 495.8 (4) 0.94 (2) 2.15 (3) -0.28 (18)
L-Leu 484.9 (5) 0.94 (3) 2.28 (2) -0.28 (19)
G-Gly 482.7 (6) 0.50 (11) 2.39 (1) 0.01 (10)
V-Val 448.6 (7) 0.83 (6) 1.99 (4) -0.17 (16)
M-Met 447.7 (8) 0.74 (7) -1.48 (8) -0.26 (17)
P-Pro 429.3 (9) 0.71 (8) -3.68 (9) 0.13 (7)
W-Trp 417.4 (10) 0.88 (5) -5.88 (12) -0.15 (14)
T-Thr 413.6 (11) 0.45 (12) -4.88 (10) 0.02 (9)
S-Ser 383.6 (12) 0.36 (13) -5.06 (11) 0.05 (8)
N-Asn 376.1 (13) 0.24 (16) -9.68 (16) 0.18 (5)
H-His 373.3 (14) 0.17 (17) -10.27 (18) -0.02 (11)
C-Cys 371.1 (15) 0.68 (9) -1.24 (7) -0.06 (12)
K-Lys 370.7 (16) 0.28 (14) -9.52 (15) 0.32 (3)
D-Asp 358.8 (17) 0.038 (19) -10.95 (19) 0.37 (1)
R-Arg 356.7 (18) 0.00 (20) -19.92 (20) 0.37 (2)
E-Glu 350.9 (19) 0.04 (18) -10.20 (17) 0.15 (6)
Q-Gln 313.1 (20) 0.25 (15) -9.38 (14) 0.26 (4)
R 1.000 0.7955 0.76 -0.79
  1. 1BLAS910101 = Scaled side chain hydrophobicity values (Black-Mould, 1991).
  2. 2WOLR810101 = Hydration potential (Wolfenden et al., 1981).
  3. 3PUNT030101 = Knowledge-based membrane-propensity scale from 1D_Helix in MPtopo databases (Punta-Maritan, 2003).