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Table 1 Properties of selected shared tasks in biomedical information extraction prior to the BioNLP ST 13.

From: Overview of the Cancer Genetics and Pathway Curation tasks of BioNLP Shared Task 2013

Task

Levels of biological organization

Representation

LLL'05

Molecular

Binary relations

BioCreative II PPI

Molecular

Binary relations

BioCreative II.5 IPT

Molecular

Binary relations

BioNLP ST'09 GE

Molecular, subcellular

Event structures

BioCreative III PPI

Molecular

Binary relations

BioNLP ST'11 GE

Molecular, subcellular

Event structures

BioNLP ST'11 EPI

Molecular

Event structures

BioNLP ST'11 ID

Molecular, organism

Event structures

BioNLP ST'11 BB

Cellular, anatomical, environment

Binary relations

BioNLP ST'11 BI

Molecular

Event structures

  1. Entity mention-focused tasks (detection and normalization) and the supporting tasks of the BioNLP ST are not included.