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Table 13 Cancer Genetics task primary evaluation F-scores by event type.

From: Overview of the Cancer Genetics and Pathway Curation tasks of BioNLP Shared Task 2013

Event

TEES-2.1

NaCTeM

NCBI

RelAgent

UET-NII

ISI

  DEVELOPMENT

71.43

64.77

67.33

66.31

61.72

53.66

  BLOOD VESSEL DEVELOPM

85.28

78.82

81.92

79.60

21.49

13.56

  GROWTH

75.97

59.85

66.67

76.92

70.87

65.52

  DEATH

81.74

73.17

74.07

64.71

77.78

63.16

  CELL DEATH

73.30

75.18

78.05

66.98

25.17

7.35

  CELL PROLIFERATION

80.00

78.33

72.73

64.39

71.43

57.40

  CELL DIVISION

0.00

0.00

0.00

0.00

0.00

0.00

  CELL DIFFERENTIATION

56.34

48.48

48.98

54.55

59.26

24.14

  REMODELING

30.00

22.22

21.05

40.00

20.00

23.53

  REPRODUCTION

100.00

100.00

100.00

100.00

100.00

100.00

Anatomical total

77.20

71.31

73.68

70.82

50.04

38.86

  MUTATION

38.00

41.05

25.11

27.36

27.91

9.52

  CARCINOGENESIS

77.94

72.18

67.14

64.12

35.96

24.72

  CELL TRANSFORMATION

81.56

82.54

71.13

67.07

57.14

32.39

  BREAKDOWN

76.74

70.13

76.54

42.42

58.67

50.70

  METASTASIS

70.91

51.05

52.69

47.79

56.41

26.20

  INFECTION

69.57

76.92

69.23

33.33

11.76

0.00

Pathological total

67.51

59.78

54.19

48.14

46.90

25.17

  METABOLISM

83.87

70.27

74.29

80.00

68.75

71.43

  SYNTHESIS

78.26

71.11

78.26

53.57

64.71

48.65

  CATABOLISM

63.64

36.36

38.10

23.08

20.00

36.36

  GLYCOLYSIS

0.00

100.00

95.45

97.78

0.00

0.00

  AMINO ACID CATABOLISM

0.00

66.67

66.67

66.67

0.00

0.00

  GENE EXPRESSION

78.21

79.96

73.69

69.45

58.01

53.28

  TRANSCRIPTION

37.33

42.86

51.55

28.12

32.00

20.93

  TRANSLATION

40.00

22.22

0.00

0.00

0.00

0.00

  PROTEIN PROCESSING

100.00

100.00

100.00

0.00

100.00

100.00

  ACETYLATION

100.00

100.00

66.67

100.00

66.67

66.67

  GLYCOSYLATION

100.00

100.00

100.00

100.00

100.00

100.00

  PHOSPHORYLATION

63.33

70.37

53.12

64.15

58.33

50.00

  UBIQUITINATION

100.00

100.00

0.00

100.00

0.00

100.00

  DEPHOSPHORYLATION

0.00

80.00

100.00

100.00

0.00

0.00

  DNA METHYLATION

66.67

66.67

30.30

42.11

32.43

33.33

  DNA DEMETHYLATION

0.00

0.00

0.00

0.00

0.00

0.00

  PATHWAY

71.30

59.07

51.14

34.29

18.31

35.64

Molecular total

72.60

72.77

67.33

60.72

49.35

46.70

  BINDING

45.35

43.93

37.89

32.69

33.94

11.92

  DISSOCIATION

0.00

0.00

0.00

0.00

0.00

0.00

  LOCALIZATION

54.83

57.20

47.58

45.22

44.94

35.94

General total

52.20

53.08

44.70

40.89

41.76

29.59

  REGULATION

32.66

28.73

14.19

26.48

5.51

4.57

  POSITIVE REGULATION

45.89

44.18

34.70

38.40

13.00

12.33

  NEGATIVE REGULATION

47.79

43.17

33.20

40.47

10.30

12.16

Regulation total

43.08

39.79

29.21

35.58

10.30

10.29

  PLANNED PROCESS

39.43

40.51

34.28

28.57

22.74

21.22

Sub-total

56.75

53.50

48.56

46.37

31.72

25.90

  NEGATION

40.00

29.55

0.00

34.64

0.00

0.00

  SPECULATION

27.14

30.35

0.00

25.90

0.00

0.00

Modification total

34.66

29.95

0.00

30.88

0.00

0.00

Total

55.41

52.09

46.38

45.32

29.94

24.47