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Table 13 Cancer Genetics task primary evaluation F-scores by event type.

From: Overview of the Cancer Genetics and Pathway Curation tasks of BioNLP Shared Task 2013

Event TEES-2.1 NaCTeM NCBI RelAgent UET-NII ISI
  DEVELOPMENT 71.43 64.77 67.33 66.31 61.72 53.66
  BLOOD VESSEL DEVELOPM 85.28 78.82 81.92 79.60 21.49 13.56
  GROWTH 75.97 59.85 66.67 76.92 70.87 65.52
  DEATH 81.74 73.17 74.07 64.71 77.78 63.16
  CELL DEATH 73.30 75.18 78.05 66.98 25.17 7.35
  CELL PROLIFERATION 80.00 78.33 72.73 64.39 71.43 57.40
  CELL DIVISION 0.00 0.00 0.00 0.00 0.00 0.00
  CELL DIFFERENTIATION 56.34 48.48 48.98 54.55 59.26 24.14
  REMODELING 30.00 22.22 21.05 40.00 20.00 23.53
  REPRODUCTION 100.00 100.00 100.00 100.00 100.00 100.00
Anatomical total 77.20 71.31 73.68 70.82 50.04 38.86
  MUTATION 38.00 41.05 25.11 27.36 27.91 9.52
  CARCINOGENESIS 77.94 72.18 67.14 64.12 35.96 24.72
  CELL TRANSFORMATION 81.56 82.54 71.13 67.07 57.14 32.39
  BREAKDOWN 76.74 70.13 76.54 42.42 58.67 50.70
  METASTASIS 70.91 51.05 52.69 47.79 56.41 26.20
  INFECTION 69.57 76.92 69.23 33.33 11.76 0.00
Pathological total 67.51 59.78 54.19 48.14 46.90 25.17
  METABOLISM 83.87 70.27 74.29 80.00 68.75 71.43
  SYNTHESIS 78.26 71.11 78.26 53.57 64.71 48.65
  CATABOLISM 63.64 36.36 38.10 23.08 20.00 36.36
  GLYCOLYSIS 0.00 100.00 95.45 97.78 0.00 0.00
  AMINO ACID CATABOLISM 0.00 66.67 66.67 66.67 0.00 0.00
  GENE EXPRESSION 78.21 79.96 73.69 69.45 58.01 53.28
  TRANSCRIPTION 37.33 42.86 51.55 28.12 32.00 20.93
  TRANSLATION 40.00 22.22 0.00 0.00 0.00 0.00
  PROTEIN PROCESSING 100.00 100.00 100.00 0.00 100.00 100.00
  ACETYLATION 100.00 100.00 66.67 100.00 66.67 66.67
  GLYCOSYLATION 100.00 100.00 100.00 100.00 100.00 100.00
  PHOSPHORYLATION 63.33 70.37 53.12 64.15 58.33 50.00
  UBIQUITINATION 100.00 100.00 0.00 100.00 0.00 100.00
  DEPHOSPHORYLATION 0.00 80.00 100.00 100.00 0.00 0.00
  DNA METHYLATION 66.67 66.67 30.30 42.11 32.43 33.33
  DNA DEMETHYLATION 0.00 0.00 0.00 0.00 0.00 0.00
  PATHWAY 71.30 59.07 51.14 34.29 18.31 35.64
Molecular total 72.60 72.77 67.33 60.72 49.35 46.70
  BINDING 45.35 43.93 37.89 32.69 33.94 11.92
  DISSOCIATION 0.00 0.00 0.00 0.00 0.00 0.00
  LOCALIZATION 54.83 57.20 47.58 45.22 44.94 35.94
General total 52.20 53.08 44.70 40.89 41.76 29.59
  REGULATION 32.66 28.73 14.19 26.48 5.51 4.57
  POSITIVE REGULATION 45.89 44.18 34.70 38.40 13.00 12.33
  NEGATIVE REGULATION 47.79 43.17 33.20 40.47 10.30 12.16
Regulation total 43.08 39.79 29.21 35.58 10.30 10.29
  PLANNED PROCESS 39.43 40.51 34.28 28.57 22.74 21.22
Sub-total 56.75 53.50 48.56 46.37 31.72 25.90
  NEGATION 40.00 29.55 0.00 34.64 0.00 0.00
  SPECULATION 27.14 30.35 0.00 25.90 0.00 0.00
Modification total 34.66 29.95 0.00 30.88 0.00 0.00
Total 55.41 52.09 46.38 45.32 29.94 24.47