Table 2 Cancer Genetics task entity types, reference resources, and definitions.
From: Overview of the Cancer Genetics and Pathway Curation tasks of BioNLP Shared Task 2013
Type | Reference | Ontology ID |
|---|---|---|
ORGANISM | NCBI taxonomy | CARO:0000012 |
Anatomical entity | Â | Â |
  ORGANISM SUBDIVISION | Species-specific | CARO:0000032 |
  ANATOMICAL SYSTEM | anatomy | CARO:0000011 |
  ORGAN | resources (e.g. | CARO:0000024 |
  MULTI-TISSUE STRUCTURE | FMA), derived | CARO:0000055 |
  TISSUE | resources (e.g. | CARO:0000043 |
  DEVELOPING ANATOMICAL STRUCTURE | UBERON) | UBERON:0005423 |
  CELL | CL | CARO:0000013 |
  CELLULAR COMPONENT | GO-CC | GO:0005575 |
  ORGANISM SUBSTANCE | FMA etc. | CARO:0000004 |
  IMMATERIAL ANATOMICAL ENTITY | FMA etc. | CARO:0000007 |
  PATHOLOGICAL FORMATION | - | - |
  CANCER | - | - |
Molecular entity | Â | Â |
  GENE OR GENE PRODUCT | gene, protein, and | SBO:0000246 |
  PROTEIN DOMAIN OR REGION | related entity DBs | SBO:0000493 |
  DNA DOMAIN OR REGION |  | SBO:0000493 |
  SIMPLE CHEMICAL | ChEBI | SBO:0000247 |
  AMINO ACID | ChEBI | CHEBI:33709 |