From: Overview of the Cancer Genetics and Pathway Curation tasks of BioNLP Shared Task 2013
Type | Core arguments | Additional arguments |
---|---|---|
Anatomical | Â | Â |
  DEVELOPMENT | Theme (Anatomy) |  |
  BLOOD VESSEL DEVELOPMENT | Theme?(Anatomy) | AtLoc? |
  GROWTH | Theme (Anatomy) |  |
  DEATH | Theme (Anatomy) |  |
  CELL DEATH | Theme?(Cell) |  |
  BREAKDOWN | Theme (Anatomy) |  |
  CELL PROLIFERATION | Theme (Cell) |  |
  CELL DIVISION | Theme (Cell) |  |
  CELL DIFFERENTIATION | Theme (Cell) | AtLoc? |
  REMODELING | Theme (Tissue) |  |
  REPRODUCTION | Theme (Organism) |  |
Pathological | Â | Â |
  MUTATION | Theme (GGP) | AtLoc?, Site? |
  CARCINOGENESIS | Theme?(Anatomy) | AtLoc? |
  CELL TRANSFORMATION | Theme (Cell) | AtLoc? |
  METASTASIS | Theme?(Anatomy) | ToLoc |
  INFECTION | Theme?(Anatomy), Participant?(Organism) |  |
Molecular | Â | Â |
  METABOLISM | Theme (Molecule) |  |
    SYNTHESIS | Theme (Simple chemical) |  |
    CATABOLISM | Theme (Molecule) |  |
      AMINO ACID CATABOLISM | Theme?(Molecule) |  |
      GLYCOLYSIS | Theme?(Molecule) |  |
    GENE EXPRESSION | Theme+(GGP) |  |
      TRANSCRIPTION | Theme (GGP) |  |
      TRANSLATION | Theme (GGP) |  |
      PROTEIN PROCESSING | Theme (GGP) |  |
  PHOSPHORYLATION | Theme (Molecule) | Site? |
(other chemical modifications defined similarly to Phosphorylation) | ||
  PATHWAY | Participant (Molecule) |  |
General | Â | Â |
  BINDING | Theme+(Molecule) | Site? |
  DISSOCIATION | Theme (Molecule) | Site? |
  LOCALIZATION | Theme+(Molecule) | At/From/ToLoc? |
Regulation | Theme (Any), Cause?(Any) | Â |
  POSITIVE REGULATION | Theme (Any), Cause?(Any) |  |
  NEGATIVE REGULATION | Theme (Any), Cause?(Any) |  |
PLANNED PROCESS | Theme*(Any), Instrument*(Entity) | Â |