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Table 5 Results of annotation-oriented evaluation on Binding and REGULATION-ALL. Acronyms: GS=gold standard, P=positives, TP=true positives, R=recall, P=precision, F=f-score.

From: Extending the evaluation of Genia Event task toward knowledge base construction and comparison to Gene Regulation Ontology task

 

Binding

REGULATION_ALL

 

P

TP

R / P / F

P

TP

R / P / F

GS

333

333

-

1944

1944

-

EVEX

306

137

41.14 / 44.77 / 42.88

1336

630

32.41 / 47.16 / 38.41

TEES-2.1

318

141

42.34 / 44.34 / 43.32

1436

643

33.08 / 44.78 / 38.05

BioSEM

302

158

47.45 / 52.32 / 49.76

1115

547

28.19 / 49.06 / 35.80

NCBI

299

125

37.54 / 41.81 / 39.56

865

481

24.74 / 55.61 / 34.25

DlutNLP

308

136

40.84 / 44.16 / 42.43

1185

515

26.49 / 43.46 / 32.92

HDS4NLP

412

139

41.74 / 33.74 / 37.32

780

411

21.14 / 52.69 / 30.18

NICTANLM

344

107

32.13 / 31.10 / 31.61

891

420

21.60 / 47.14 / 29.63

USheff

224

105

31.53 / 46.88 / 37.70

1050

324

16.67 / 30.86 / 21.64

UZH

264

74

22.22 / 28.03 / 24.79

1912

381

19.60 / 19.93 / 19.76

HCMUS

478

129

38.74 / 26.99 / 31.81

693

215

11.06 / 31.02 / 16.31