Table 6 Results of KB-oriented evaluation for Q1 (Find the proteins in the context of gene expression) and Q2 (Find the proteins in the context of localization).
| Â | Q1 (Gene_expression) | Q2 (Localization) | ||||
|---|---|---|---|---|---|---|
| Â | P | TP | R / P / F | P | TP | R / P / F |
GS | 604 | 604 | - | 94 | 94 | - |
EVEX | 604 | 497 | 82.28 / 82.28 / 82.28 | 56 | 45 | 47.87 / 80.36 / 60.00 |
TEES-2.1 | 604 | 497 | 82.28 / 82.28 / 82.28 | 59 | 48 | 51.06 / 81.36 / 62.75 |
BioSEM | 537 | 456 | 75.50 / 84.92 / 79.93 | 52 | 43 | 45.74 / 82.69 / 58.90 |
NCBI | 647 | 493 | 81.62 / 76.20 / 78.82 | 46 | 38 | 40.43 / 82.61 / 54.29 |
DlutNLP | 591 | 475 | 78.64 / 80.37 / 79.50 | 38 | 35 | 37.23 / 92.11 / 53.03 |
HDS4NLP | 563 | 500 | 82.78 / 88.81 / 85.69 | 68 | 50 | 53.19 / 73.53 / 61.73 |
NICTANLM | 748 | 501 | 82.95 / 66.98 / 74.11 | 52 | 30 | 31.91 / 57.69 / 41.10 |
USheff | 452 | 386 | 63.91 / 85.40 / 73.11 | 26 | 23 | 24.47 / 88.46 / 38.33 |
UZH | 496 | 404 | 66.89 / 81.45 / 73.45 | 40 | 34 | 36.17 / 85.00 / 50.75 |
HCMUS | 763 | 481 | 79.64 / 63.04 / 70.37 | 68 | 31 | 32.98 / 45.59 / 38.27 |