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Table 9 Results of KB evaluation for Q7 (Find the protein pairs of which one regulates expression of the other) and Q8 (Find the protein pairs of which one regulates expression of the other, transitive).

From: Extending the evaluation of Genia Event task toward knowledge base construction and comparison to Gene Regulation Ontology task

 

Q7 (Regulation of Exp)

Q8 (transitive Regulation of Exp)

 

P

TP

R / P / F

P

TP

R / P / F

GS

111

111

-

128

128

-

EVEX

52

38

34.23 / 73.08 / 46.63

61

50

39.06 / 81.97 / 52.91

TEES-2.1

67

43

38.74 / 64.18 / 48.31

77

56

43.75 / 72.73 / 54.63

BioSEM

26

21

18.92 / 80.77 / 30.66

31

25

19.53 / 80.65 / 31.45

NCBI

37

25

22.52 / 67.57 / 33.78

37

32

25.00 / 86.49 / 38.79

DlutNLP

49

36

32.43 / 73.47 / 45.00

52

41

32.03 / 78.85 / 45.56

HDS4NLP

0

0

00.00 / 00.00 / 00.00

0

0

00.00 / 00.00 / 00.00

NICTANLM

42

24

21.62 / 57.14 / 31.37

40

30

23.44 / 75.00 / 35.71

USheff

31

20

18.02 / 64.52 / 28.17

29

20

15.63 / 68.97 / 25.48

UZH

10

2

01.80 / 20.00 / 03.31

10

3

02.34 / 30.00 / 04.35

HCMUS

38

16

14.41 / 42.11 / 21.48

38

16

12.50 / 42.11 / 19.28

  1. Acronyms: GS=gold standard, P=positives, TP=true positives, R=recall, P=precision, F=f-score, Exp=Gene_expression.