Semi-supervised Learning for the BioNLP Gene Regulation Network

BMC Bioinformatics

Table 1 Comparative table of results for our different systems.

System	S	D	I	C	M	Recall	Prec.	F1	SER
Original submission of [4]	15	53	5	20	40	22.7	50.0	31.3	0.830
[BASIC]	28	18	100	42	170	47.7	24.7	32.6	1.659
[W_REG]	30	12	204	46	280	52.3	16.4	25.0	2.795
[PRE_SEL]
select POS, no NEG	28	20	77	40	145	45.5	27.6	34.3	1.420
select POS, select NEG	13	39	21	36	70	40.9	51.4	45.6	0.830
select POS, all NEG	13	43	22	32	67	36.4	47.8	41.3	0.886

All results are obtained on the official test set. (S = substitutions, I = insertions, D = deletions, C = correct predictions, M = number of predictions, N = 88 = number of arcs in reference network).

ISSN: 1471-2105