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Table 3 Confusion matrix for RUPEE on the BioNLP 2013 GE task, computed by cross-validation on the training and development sets.

From: Extracting biomedical events from pairs of text entities

Predicted / True None Gene exp Trans Pro cat Phosp Local Bind Regu Pos reg Neg reg  
None 223460 404 163 27 42 60 296 390 799 397 226038
Gene expression 440 2741 13 0 0 17 2 1 43 5 3262
Transcription 186 16 565 0 0 0 0 4 15 0 786
Protein catabolism 30 0 0 150 0 0 0 0 1 0 181
Phosphorylation 76 0 0 0 413 0 0 0 0 0 489
Localization 114 20 0 0 0 398 4 0 1 2 539
Binding 507 0 0 0 0 1 1470 2 0 1 1981
Regulation 453 0 0 0 0 0 1 813 33 4 1304
Positive regulation 1245 42 10 0 0 0 2 67 2456 7 3829
Negative regulation 555 7 2 1 1 0 0 46 11 1176 1799
  227066 3230 753 178 456 476 1775 1323 3359 1592