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Table 3 Confusion matrix for RUPEE on the BioNLP 2013 GE task, computed by cross-validation on the training and development sets.

From: Extracting biomedical events from pairs of text entities

Predicted / True

None

Gene exp

Trans

Pro cat

Phosp

Local

Bind

Regu

Pos reg

Neg reg

 

None

223460

404

163

27

42

60

296

390

799

397

226038

Gene expression

440

2741

13

0

0

17

2

1

43

5

3262

Transcription

186

16

565

0

0

0

0

4

15

0

786

Protein catabolism

30

0

0

150

0

0

0

0

1

0

181

Phosphorylation

76

0

0

0

413

0

0

0

0

0

489

Localization

114

20

0

0

0

398

4

0

1

2

539

Binding

507

0

0

0

0

1

1470

2

0

1

1981

Regulation

453

0

0

0

0

0

1

813

33

4

1304

Positive regulation

1245

42

10

0

0

0

2

67

2456

7

3829

Negative regulation

555

7

2

1

1

0

0

46

11

1176

1799

 

227066

3230

753

178

456

476

1775

1323

3359

1592

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