Protein complex detection in PPI networks based on data integration and supervised learning method

BMC Bioinformatics

Table 13 The Accuracy performances of SLPC on denoising PPI networks with different denoising thresholds.

den_thred	DIP		Krogan		Gavin		Avg.Δ
	#Den.	#Den.Ext.	#Den.		#Den.	#Den.Ext
0.5	0.331	0.3515	0.3215	0.3375	0.3309	0.3415	4.79%
0.6	0.3312	0.3508	0.322	0.3374	0.3312	0.3415	4.60%
0.7	0.3313	0.351	0.3216	0.3373	0.3312	0.3413	4.63%
0.8	0.3307	0.3513	0.3227	0.338	0.3308	0.3425	4.84%
0.9	0.3315	0.3516	0.3242	0.3393	0.3316	0.3419	4.61%
1.0	0.3314	0.3528	0.3256	0.3401	0.3324	0.3419	4.59%
1.1	0.3229	0.3482	0.3215	0.3391	0.3268	0.3412	5.91%
1.2	0.324	0.3478	0.3218	0.3401	0.327	0.3408	5.75%
1.3	0.3232	0.3477	0.3229	0.3405	0.327	0.3413	5.80%
1.4	0.3227	0.3461	0.3231	0.3397	0.327	0.34	5.45%
Clusterone(0.9)	0.4284	0.4267	0.3937	0.3985	0.4108	0.4124	0.40%
Δ(0.9)		-17.60%		-14.86%		-17.10%	-16.52%

ISSN: 1471-2105