Protein complex detection in PPI networks based on data integration and supervised learning method

BMC Bioinformatics

Table 14 The MMR performances of SLPC on denoising PPI networks with different denoising thresholds.

den_thred	DIP		Krogan		Gavin		Avg.Δ
	#Den.	#Den.Ext.	#Den.		#Den.	#Den.Ext
0.5	0.3294	0.3678	0.327	0.3817	0.3873	0.4225	12.49%
0.6	0.3319	0.3702	0.3281	0.3822	0.3879	0.4231	12.37%
0.7	0.3319	0.3703	0.3279	0.3816	0.3879	0.423	12.33%
0.8	0.3321	0.3709	0.3278	0.3813	0.3873	0.4224	12.36%
0.9	0.3342	0.3727	0.3317	0.3848	0.3935	0.428	12.10%
1.0	0.3347	0.3729	0.3351	0.3871	0.3943	0.4291	11.92%
1.1	0.3148	0.3565	0.3215	0.3789	0.3693	0.4098	14.02%
1.2	0.3151	0.3573	0.3203	0.3786	0.3703	0.4107	14.17%
1.3	0.3171	0.3585	0.3231	0.3797	0.3703	0.4098	13.75%
1.4	0.3154	0.3614	0.3247	0.382	0.3705	0.4125	14.52%
Clusterone(0.9)	0.2913	0.2829	0.3050	0.3188	0.3649	0.3730	1.29%
Δ(0.9)		31.74%		20.70%		14.75%	22.40%

ISSN: 1471-2105