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Table 7 The details of the gold standard protein complexes of denoising PPI networks with different denoising thresholds.

From: Protein complex detection in PPI networks based on data integration and supervised learning method

den_thred

DIP

Krogan

Gavin

 

#complex

#size

#complex

#size

#complex

#size

0.5

679

7.01

565

7.04

542

6.49

0.6

673

7.03

563

7.03

542

6.49

0.7

673

7.03

563

7.03

542

6.49

0.8

673

7.01

563

7.02

542

6.49

0.9

668

7.03

557

7.03

534

6.55

1.0

667

7.03

552

7.07

533

6.56

1.1

660

7.03

541

7.1

518

6.66

1.2

658

7.04

539

7.12

517

6.67

1.3

653

7.06

538

7.11

517

6.67

1.4

649

7.05

533

7.12

515

6.68

  1. #den_thred. denotes the different denoising thresholds; #Den. denotes the denoising PPI network; # Den.Ext. denotes the denoising extended PPI network (denoising PPI network added new PPI data); #complex denotes the number of complexes; #size denotes the average size of complexes.