Global multiple protein-protein interaction network alignment by combining pairwise network alignments

BMC Bioinformatics

Table 4 PPIN Overview

Species	Proteins	Interactions	BLAST (inter-species)	Clustering Coefficient
Arabidopsis	2651	5235	73221	0.133
C. elegans	4305	7746	135907	0.023
Drosophila	8374	25610	261864	0.023
E. coli	2818	13841	15401	0.097
Human	9003	34935	340626	0.095
Mouse	2897	4372	171737	0.129
Rat	1150	1305	61318	0.075
Yeast	5674	49830	107616	0.127

The BLAST column shows the number of inter-species protein pairs where one protein is part of the species in the given row and for which we have a BLAST bit score recorded in our data set. Bold typeface indicates the largest value in a column.

ISSN: 1471-2105