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Table 4 mRNA expression of key gene mutations in the Relapse sample

From: Enhancing cancer clonality analysis with integrative genomics

Gene

DP

AF

Transcript

FPKM

MYC

100

100

ENST00000377970

24

MYC

100

100

ENST00000524013

55

SETD2

29

50

ENST00000409792

3.2

SETD2

29

50

ENST00000431180

1.5

SETD2

29

50

ENST00000445387

1.2

SETD2

29

50

CUFF.29743.3

9.4

MTOR

20

50

ENST00000361445

4.7

MTOR

20

50

ENST00000376838

2.2

  1. A tabular version of the clonal dynamics as shown in Figure 3B, lists changes in depth, allelic frequency and FPKM for the Relapse sample.