Table 3 Turku Event Extraction System in the BioNLP Shared Tasks.

GE09 1

GENIA Event Extraction

- / 51.95

49.11 / -^a

GE09 2

Protein Site Arguments

- / -

- / -^a

GE09 3

Negation & Speculation

- / -

- / -^a

GE11 1

GENIA Event Extraction

55.78 / 53.30

53.91 / 54.03

GE11 2

Protein Site Arguments

53.39 / 51.97

-^b/-^b

GE11 3

Negation & Speculation

38.34 / 26.86

37.92 / 31.85

EPI11

Epigenetics and PTM:s

56.41 / 53.33

60.03 / 56.22

ID11

Infectious Diseases

44.92 / 42.57

50.56 / 49.96

BB11

Bacteria Biotopes

27.01 / 26

30.87 / -^a

BI11

Bacteria Gene Interactions

77.24 / 77

76.81 / -^a

CO11

Protein/Gene Coreference

36.22 / 23.77

30.11 / -^a

REL11

Entity Relations

65.99 / 57.7

-/-^a

REN11

Bacteria Gene Renaming

84.62 / 87.0

85.04 / -^a

GE13

GENIA Event Extraction

51.43* / 50.74

50.13* / 49.18

CG13

Cancer Genetics

61.82* / 55.41

63.50* / 54.99

PC13

Pathway Curation

57.63* / 51.10

59.74* / 49.90

GRO13

Gene Regulation Ontology

47.18* / 21.50

47.42* / -^a

GRN13

Gene Regulation Network

-^c / 0.86 SER

-^c / 0.85 SER

BB13 1

NER and Categorization

-/-

-/-

BB13 2

Bacteria Localization

11.81* / 42

13.71* / 42.20

BB13 3

Bacteria Entities & Relations

64.67* / 14

63.34* / 14.24