Skip to main content

Table 2 Comparison of SpliceJumper, TopHat2 and MapSplice2 on simulated Test1 dataset when the slack value is 8.

From: SpliceJumper: a classification-based approach for calling splicing junctions from RNA-seq data

Tools False positive False negative True positive Precision Recall F-value
SpliceJumper 78 862 14,077 0.9945 0.9423 0.9677
TopHat2 248 1,475 13,430 0.9819 0.9010 0.9397
MapSplice2 125 888 14,006 0.9912 0.9404 0.9651
  1. False positive: the number of called out junctions that are actually false ones. False negative: the number of not called out junctions that are actually true ones. True positive: the number of called out junctions that are actually true ones.