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Table 2 Comparison of SpliceJumper, TopHat2 and MapSplice2 on simulated Test1 dataset when the slack value is 8.

From: SpliceJumper: a classification-based approach for calling splicing junctions from RNA-seq data

Tools

False positive

False negative

True positive

Precision

Recall

F-value

SpliceJumper

78

862

14,077

0.9945

0.9423

0.9677

TopHat2

248

1,475

13,430

0.9819

0.9010

0.9397

MapSplice2

125

888

14,006

0.9912

0.9404

0.9651

  1. False positive: the number of called out junctions that are actually false ones. False negative: the number of not called out junctions that are actually true ones. True positive: the number of called out junctions that are actually true ones.
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BMC Bioinformatics

ISSN: 1471-2105

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