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Table 5 Comparison of running time and memory usage for SpliceJumper, TopHat2 and MapSplice2 on simulated Test1 dataset.

From: SpliceJumper: a classification-based approach for calling splicing junctions from RNA-seq data

Tools

Running time

Memory

SpliceJumper

711 minutes and 28 seconds

3.14G

TopHat2

679 minutes and 18 seconds

6.53G

MapSplice2

548 minutes and 5 seconds

4.61G