Table 4 Performatnce evaluation on simulated sequencing datasets having length 60 and coverage 50.
From: EC: an efficient error correction algorithm for short reads
Dataset | Method | % Sensitivity | % Specificity | % Accuracy | EBA | CHD | CPU Time (m) |
|---|---|---|---|---|---|---|---|
D7 | EC | 98.13 | 99.99 | 97.99 | 2.51 × 10 −5 | 52,281 | 6.49 |
|  | Racer | 98.86 | 99.91 | 94.43 | 9.55 × 10−4 | 1,47,171 | 5.72 |
|  | Musket | 95.63 | 99.99 | 95.61 | 6.99 × 10−5 | 1,14,474 | 9.42 |
|  | Coral | 93.47 | 99.99 | 92.76 | 1.08 × 10−4 | 1,88,584 | 23.02 |
D8 | EC | 98.11 | 99.99 | 97.79 | 6.88 × 10−5 | 25,238 | 2.91 |
|  | Racer | 99.44 | 99.98 | 98.34 | 2.11 × 10−4 | 19,108 | 2.13 |
|  | Musket | 95.67 | 99.99 | 95.67 | 2.02 × 10 −5 | 49,438 | 6.84 |
|  | Coral | 93.46 | 99.99 | 93.15 | 5.16 × 10−5 | 78,162 | 9.57 |
D9 | EC | 98.05 | 99.98 | 97.10 | 1.50 × 10−4 | 1,35,092 | 12.26 |
|  | Racer | 98.92 | 99.95 | 96.36 | 5.57 × 10−4 | 1,71,542 | 9.10 |
|  | Musket | 95.63 | 99.99 | 95.59 | 7.87 × 10 −5 | 2,04,776 | 16.88 |
|  | Coral | 93.45 | 99.98 | 92.53 | 1.42 × 10−4 | 3,47,258 | 38.01 |
D10 | EC | 98.14 | 99.99 | 97.78 | 5.99 × 10−5 | 93,821 | 11.12 |
|  | Racer | 99.00 | 99.96 | 97.13 | 4.28 × 10−4 | 1,22,798 | 7.88 |
|  | Musket | 95.70 | 99.99 | 95.69 | 3.12 × 10 −5 | 1,81,777 | 22.76 |
|  | Coral | 93.51 | 99.99 | 93.07 | 6.32 × 10−5 | 2,92,345 | 34.21 |
D11 | EC | 98.08 | 99.99 | 97.69 | 7.21 × 10 −5 | 1,45,035 | 19.64 |
|  | Racer | 98.12 | 99.58 | 77.23 | 4.23 × 10−3 | 14,46,476 | 14.18 |
|  | Musket | 95.54 | 99.99 | 95.47 | 1.36 × 10−4 | 2,84,642 | 29.44 |
|  | Coral | 93.48 | 99.98 | 92.75 | 1.10 × 10−4 | 4,54,814 | 59.33 |
D12 | EC | 97.52 | 99.84 | 89.51 | 1.34 × 10−3 | 4,59,980 | 16.43 |
|  | Racer | 97.27 | 99.69 | 82.19 | 2.96 × 10−3 | 7,82,370 | 9.19 |
|  | Musket | 94.78 | 99.99 | 94.46 | 5.76 × 10 −4 | 2,42,375 | 28.50 |
|  | Coral | 93.31 | 99.91 | 88.79 | 7.00 × 10−4 | 4,88,658 | 50.91 |