TY - JOUR AU - Stein, L. D. PY - 2010 DA - 2010// TI - The case for cloud computing in genome informatics JO - Genome Biol VL - 11 UR - https://doi.org/10.1186/gb-2010-11-5-207 DO - 10.1186/gb-2010-11-5-207 ID - Stein2010 ER - TY - CHAP AU - Shih, A. C. -. C. AU - Liu, T. PY - 2012 DA - 2012// TI - Predicting MicroRNAs BT - Systems Biology: Applications in Cancer-related Research UR - https://doi.org/10.1142/9789814324465_0010 DO - 10.1142/9789814324465_0010 ID - Shih2012 ER - TY - JOUR AU - McKenna, A. AU - Hanna, M. AU - Banks, E. AU - Sivachenko, A. AU - Cibulskis, K. AU - Kernytsky, A. AU - Garimella, K. AU - Altshuler, D. AU - Gabriel, S. AU - Daly, M. PY - 2010 DA - 2010// TI - The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data JO - Genome research VL - 20 UR - https://doi.org/10.1101/gr.107524.110 DO - 10.1101/gr.107524.110 ID - McKenna2010 ER - TY - JOUR AU - Trapnell, C. AU - Hendrickson, D. G. AU - Sauvageau, M. AU - Goff, L. AU - Rinn, J. L. AU - Pachter, L. PY - 2012 DA - 2012// TI - Differential analysis of gene regulation at transcript resolution with RNA-seq JO - Nature biotechnology VL - 31 UR - https://doi.org/10.1038/nbt.2450 DO - 10.1038/nbt.2450 ID - Trapnell2012 ER - TY - JOUR AU - Carver, T. AU - Harris, S. R. AU - Berriman, M. AU - Parkhill, J. AU - McQuillan, J. A. PY - 2012 DA - 2012// TI - Artemis: an integrated platform for visualization and analysis of high-throughput sequence-based experimental data JO - Bioinformatics VL - 28 UR - https://doi.org/10.1093/bioinformatics/btr703 DO - 10.1093/bioinformatics/btr703 ID - Carver2012 ER - TY - JOUR AU - Fiume, M. AU - Williams, V. AU - Brook, A. AU - Brudno, M. PY - 2010 DA - 2010// TI - Savant: genome browser for high-throughput sequencing data JO - Bioinformatics VL - 26 UR - https://doi.org/10.1093/bioinformatics/btq332 DO - 10.1093/bioinformatics/btq332 ID - Fiume2010 ER - TY - JOUR AU - Milne, I. AU - Stephen, G. AU - Bayer, M. AU - Cock, P. J. AU - Pritchard, L. AU - Cardle, L. AU - Shaw, P. D. AU - Marshall, D. PY - 2013 DA - 2013// TI - Using Tablet for visual exploration of second-generation sequencing data JO - Briefings in bioinformatics VL - 14 UR - https://doi.org/10.1093/bib/bbs012 DO - 10.1093/bib/bbs012 ID - Milne2013 ER - TY - JOUR AU - Thorvaldsdóttir, H. AU - Robinson, J. T. AU - Mesirov, J. P. PY - 2013 DA - 2013// TI - Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration JO - Briefings in bioinformatics VL - 14 UR - https://doi.org/10.1093/bib/bbs017 DO - 10.1093/bib/bbs017 ID - Thorvaldsdóttir2013 ER - TY - BOOK AU - Seow, S. C. PY - 2008 DA - 2008// TI - Designing and engineering time: the psychology of time perception in software: Addison-Wesley Professional ID - Seow2008 ER - TY - JOUR AU - Trapnell, C. AU - Roberts, A. AU - Goff, L. AU - Pertea, G. AU - Kim, D. AU - Kelley, D. R. AU - Pimentel, H. AU - Salzberg, S. L. AU - Rinn, J. L. AU - Pachter, L. PY - 2012 DA - 2012// TI - Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks JO - Nature protocols VL - 7 UR - https://doi.org/10.1038/nprot.2012.016 DO - 10.1038/nprot.2012.016 ID - Trapnell2012 ER - TY - JOUR AU - Trapnell, C. AU - Pachter, L. AU - Salzberg, S. L. PY - 2009 DA - 2009// TI - TopHat: discovering splice junctions with RNA-Seq JO - Bioinformatics VL - 25 UR - https://doi.org/10.1093/bioinformatics/btp120 DO - 10.1093/bioinformatics/btp120 ID - Trapnell2009 ER - TY - JOUR AU - Hubbard, T. AU - Barker, D. AU - Birney, E. AU - Cameron, G. AU - Chen, Y. AU - Clark, L. AU - Cox, T. AU - Cuff, J. AU - Curwen, V. AU - Down, T. PY - 2002 DA - 2002// TI - The Ensembl genome database project JO - Nucleic acids research VL - 30 UR - https://doi.org/10.1093/nar/30.1.38 DO - 10.1093/nar/30.1.38 ID - Hubbard2002 ER -