From: Light-RCV: a lightweight read coverage viewer for next generation sequencing data
Frequency | Savant | Tablet | IGV | Light-RCV |
---|---|---|---|---|
Per NGS experiment1 | Â | Â | Â | Â |
Saccharomyces cerevisiae | 0.00 ± 0.00 | 0.00 ± 0.00 | 0.00 ± 0.00 | 56.12 ± 1.07 |
Per loading an NGS experiment2 | Â | Â | Â | Â |
Saccharomyces cerevisiae | 3.71 ± 0.22 | 11.79 ± 0.48 | 9.94 ± 0.55 | 0.00 ± 0.00 |
Per visualization of a genomic region3 | Â | Â | Â | Â |
1 kb genomic region | 0.44 ± 0.10 | (1.08 ± 0.12) | 1.37 ± 0.28 | 0.33 ± 0.02 |
2 kb genomic region | 0.39 ± 0.09 | (1.08 ± 0.16) | 1.17 ± 0.13 | 0.33 ± 0.03 |
5 kb genomic region | 0.53 ± 0.09 | (1.01 ± 0.17) | 1.10 ± 0.12 | 0.37 ± 0.01 |
10 kb genomic region | 0.77 ± 0.08 | (1.07 ± 0.13) | 1.16 ± 0.11 | 0.38 ± 0.04 |
20 kb genomic region | 0.90 ± 0.08 | (1.03 ± 0.12) | 1.14 ± 0.14 | 0.43 ± 0.03 |
50 kb genomic region | * | (1.02 ± 0.15) | 1.63 ± 0.16 | 0.76 ± 0.03 |
.1 Mb genomic region | * | (0.84 ± 0.10) | * | 1.34 ± 0.06 |
.2 Mb genomic region | * | (0.96 ± 0.12) | * | 2.47 ± 0.12 |
.5 Mb genomic region | * | (0.92 ± 0.12) | * | 12.37 ± 0.23 |
Amortized processing time | Â | Â | Â | Â |
20 kb genomic region | 0.91 ± 0.08 | (0.92 ± 0.12) | 1.16 ± 0.14 | 0.53 ± 0.03 |