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Table 1 The numbers of the compared algorithms, the performance indices, and the predicted cooperative TF pairs (PCTFPs) for each of the 15 existing algorithms.

From: PCTFPeval: a web tool for benchmarking newly developed algorithms for predicting cooperative transcription factor pairs in yeast

Algorithm

# of existing algorithms used for performance comparison in their paper

# of indices used for performance evaluation in their paper

# of PCTFPs

Banerjee and Zhang

(NAR 2003) [8]

0

1

31

Harbison et al.

(Nature 2004) [4]

0

0

94

Nagamine et al.

(NAR 2005) [9]

0

1

24

Tsai et al.

(PNAS 2005) [10]

0

1

18

Chang et al.

(Bioinformatics 2006) [11]

2

1

55

He et al.

(IEEE GCCW 2006) [12]

2

1

30

Yu et al.

(NAR 2006) [5]

0

1

300

Wang J

(JBI 2007) [13]

3

1

14

Elati et al.

(Bioinformatics 2007) [7]

4

1

20

Datta and Zhao

(Bioinformatics 2008) [6]

3

1

25

Chuang et al.

(BMC Bioinformatics 2009) [14]

4

2

13

Wang Y et al.

(NAR 2009) [15]

5

2

159

Yang et al.

(Cell Research 2010) [16]

3

1

186

Chen et al.

(Bioinformatics 2012) [3]

2

2

221

Lai et al.

(BMC Systems Biology 2014) [17]

11

3

27