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Table 1 The numbers of the compared algorithms, the performance indices, and the predicted cooperative TF pairs (PCTFPs) for each of the 15 existing algorithms.

From: PCTFPeval: a web tool for benchmarking newly developed algorithms for predicting cooperative transcription factor pairs in yeast

Algorithm # of existing algorithms used for performance comparison in their paper # of indices used for performance evaluation in their paper # of PCTFPs
Banerjee and Zhang
(NAR 2003) [8]
0 1 31
Harbison et al.
(Nature 2004) [4]
0 0 94
Nagamine et al.
(NAR 2005) [9]
0 1 24
Tsai et al.
(PNAS 2005) [10]
0 1 18
Chang et al.
(Bioinformatics 2006) [11]
2 1 55
He et al.
(IEEE GCCW 2006) [12]
2 1 30
Yu et al.
(NAR 2006) [5]
0 1 300
Wang J
(JBI 2007) [13]
3 1 14
Elati et al.
(Bioinformatics 2007) [7]
4 1 20
Datta and Zhao
(Bioinformatics 2008) [6]
3 1 25
Chuang et al.
(BMC Bioinformatics 2009) [14]
4 2 13
Wang Y et al.
(NAR 2009) [15]
5 2 159
Yang et al.
(Cell Research 2010) [16]
3 1 186
Chen et al.
(Bioinformatics 2012) [3]
2 2 221
Lai et al.
(BMC Systems Biology 2014) [17]
11 3 27