From: Analysis of genomic rearrangements by using the Burrows-Wheeler transform of short-read data
patient ID | predicted | detected | known | agree | rate |
---|---|---|---|---|---|
(a) Number of intra-chromosomal somatic breakpoints | |||||
22 | 51 | 17 | 13 | 6 | 46% |
23 | 67 | 49 | 43 | 27 | 63% |
39 | 113 | 92 | 91 | 72 | 79% |
43 | 94 | 89 | 77 | 58 | 75% |
45 | 48 | 42 | 30 | 21 | 70% |
64 | 123 | 113 | 91 | 70 | 77% |
71 | 11 | 10 | 9 | 2 | 22% |
81 | 8 | 7 | 12 | 6 | 50% |
90 | 44 | 39 | 29 | 19 | 66% |
117 | 242 | 219 | 158 | 146 | 92% |
126 | 55 | 17 | 11 | 7 | 64% |
145 | 83 | 72 | 55 | 50 | 91% |
172 | 179 | 139 | 135 | 91 | 67% |
198 | 88 | 53 | 65 | 37 | 57% |
207 | 72 | 65 | 58 | 49 | 84% |
268 | 75 | 49 | 41 | 31 | 76% |
Total | 1353 | 1072 | 918 | 692 | 75% |
(b) Number of inter-chromosomal somatic breakpoints | |||||
patient ID | predicted | detected | known | agree | rate |
22 | 10 | 8 | 1 | 0 | 0% |
23 | 14 | 12 | 5 | 2 | 40% |
39 | 34 | 30 | 14 | 8 | 57% |
43 | 19 | 18 | 9 | 5 | 56% |
45 | 15 | 12 | 12 | 9 | 75% |
64 | 14 | 11 | 9 | 3 | 33% |
71 | 12 | 8 | 7 | 0 | 0% |
81 | 5 | 4 | 4 | 0 | 0% |
90 | 7 | 6 | 6 | 1 | 17% |
117 | 17 | 15 | 6 | 3 | 50% |
126 | 4 | 4 | 3 | 0 | 0% |
145 | 41 | 37 | 20 | 14 | 70% |
172 | 33 | 25 | 8 | 3 | 38% |
198 | 8 | 7 | 1 | 0 | 0% |
207 | 6 | 6 | 7 | 1 | 14% |
208 | 9 | 9 | 7 | 3 | 43% |
Total | 248 | 212 | 119 | 52 | 44% |