Prediction of neddylation sites from protein sequences and sequence-derived properties

BMC Bioinformatics

Table 4 Comparison of SVM prediction performance to known or predicted motifs using test set.

Predictor	Acc	Sp	Sn	MCC
AAIV[RQ]IMKS¹	0.96	1.00	0.09	0.30
IVRIMKS²	0.96	1.00	0.09	0.30
[IL][VIT][RQ][IS][MLV]K[MAS][RHE]³	0.95	1.00	0.09	0.20
SVM	0.90	0.91	0.64	0.35

¹This motif was derived using MEME normal mode. ²This motif was derived using MEME discriminative mode. For prediction of both motifs, same training sites with SVM training were used. ³ This motif was reviewed in [10].

ISSN: 1471-2105