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Table 4 Mean SP and TC scores on SABmark

From: Improving multiple sequence alignment by using better guide trees

  

ClustalW

MSAProbs

Probalign

ProbCons

T-Coffee

  

Adaptive

Original

Adaptive

Original

Adaptive

Original

Adaptive

Original

Adaptive

Original

SP

0%-60%

52.472

51.957

60.280

60.245

59.666

59.532

59.826

59.690

59.377

59.158

 

0%-30%

44.504

43.907

52.081

51.996

51.251

51.161

51.601

51.459

51.266

50.799

 

30%-60%

81.954

81.739

90.616

90.766

90.802

90.507

90.258

90.146

89.388

90.087

TC

0%-60%

31.927

31.495

39.946

40.044

38.941

38.626

39.437

39.166

39.291

39.597

 

0%-30%

22.398

22.020

29.132

29.043

27.894

27.702

28.559

28.198

28.518

28.599

 

30%-60%

67.183

66.551

79.954

80.748

79.816

79.044

79.687

79.747

79.151

80.291

  1. Average SP score and average TC score of the alignments on SABmark generated by the five aligners with guide tree generated by adaptive method and by aligners' own. Rows show the average sum of pairs scores (SP) and total column scores (TC) multiplied by 100. The best results in each pair are shown in bold.