Table 1 The alignment rate and precision of each alignment method on single-end simulated data with different read length.
From: Re-alignment of the unmapped reads with base quality score
| Â | 50-bp | 75-bp | 100-bp | |||
|---|---|---|---|---|---|---|
| Â | Align.Rate(%) | Prec(%) | Align.Rate(%) | Prec(%) | Align.Rate(%) | Prec(%) |
BWA | 79.4737 | 99.7359 | 73.7762 | 99.7975 | 30.3573 | 99.7208 |
BWA(mem) | - | - | 82.8545 | 99.8912 | 83.0971 | 99.8004 |
RAUR(BWA) | 83.5165 | 99.3132 | 86.5413 | 99.1875 | 87.8022 | 99.1834 |
Bowtie2 | 74.8779 | 99.6313 | 77.8351 | 99.7501 | 71.4820 | 99.8918 |
Bowtie2(local) | - | - | 85.206 | 95.8658 | 82.3958 | 95.5368 |
RAUR(Bowtie2) | 83.0495 | 98.2984 | 85.3716 | 98.3442 | 86.8258 | 98.2009 |