Skip to main content

Table 1 The alignment rate and precision of each alignment method on single-end simulated data with different read length.

From: Re-alignment of the unmapped reads with base quality score

  50-bp 75-bp 100-bp
  Align.Rate(%) Prec(%) Align.Rate(%) Prec(%) Align.Rate(%) Prec(%)
BWA 79.4737 99.7359 73.7762 99.7975 30.3573 99.7208
BWA(mem) - - 82.8545 99.8912 83.0971 99.8004
RAUR(BWA) 83.5165 99.3132 86.5413 99.1875 87.8022 99.1834
Bowtie2 74.8779 99.6313 77.8351 99.7501 71.4820 99.8918
Bowtie2(local) - - 85.206 95.8658 82.3958 95.5368
RAUR(Bowtie2) 83.0495 98.2984 85.3716 98.3442 86.8258 98.2009
  1. There are 7,740,912 simulated single-end reads with length 50-bp, 5,156,962 with length 75-bp, and 3,868,843 with length 100-bp.