Table 2 The alignment rate and precision of each alignment method on paired-end simulated data with different read length.
From: Re-alignment of the unmapped reads with base quality score
| Â | 50-bp | 75-bp | 100-bp | |||
|---|---|---|---|---|---|---|
| Â | Align.Rate(%) | Prec(%) | Align.Rate(%) | Prec(%) | Align.Rate(%) | Prec(%) |
BWA | 89.0737 | 99.6436 | 91.6370 | 99.8411 | 34.7815 | 99.6929 |
BWA(mem) | - | - | 97.3837 | 99.8505 | 96.6372 | 99.6355 |
RAUR(BWA) | 94.8130 | 99.2667 | 96.8181 | 99.7171 | 97.0432 | 98.9618 |
Bowtie2 | 84.2039 | 99.8432 | 88.0185 | 99.9409 | 77.5385 | 99.9537 |
Bowtie2(local) | - | - | 95.0565 | 98.0066 | 90.5642 | 96.8716 |
RAUR(Bowtie2) | 96.6203 | 98.2447 | 96.9858 | 99.1592 | 96.8685 | 98.7567 |