Skip to main content

Table 2 The alignment rate and precision of each alignment method on paired-end simulated data with different read length.

From: Re-alignment of the unmapped reads with base quality score

  50-bp 75-bp 100-bp
  Align.Rate(%) Prec(%) Align.Rate(%) Prec(%) Align.Rate(%) Prec(%)
BWA 89.0737 99.6436 91.6370 99.8411 34.7815 99.6929
BWA(mem) - - 97.3837 99.8505 96.6372 99.6355
RAUR(BWA) 94.8130 99.2667 96.8181 99.7171 97.0432 98.9618
Bowtie2 84.2039 99.8432 88.0185 99.9409 77.5385 99.9537
Bowtie2(local) - - 95.0565 98.0066 90.5642 96.8716
RAUR(Bowtie2) 96.6203 98.2447 96.9858 99.1592 96.8685 98.7567
  1. There are 996,739 pairs simulated paired-end reads with length 50-bp, 1,541,980 pairs with length 75-bp, and 1,156,184 pairs with length 100-bp.