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Table 3 The number of TP (true positive), and FP (false positive) in the re-aligned reads from single-end simulated datasets.

From: Re-alignment of the unmapped reads with base quality score

  50-bp 75-bp 100-bp
  #RA #TP #FP #RA #TP #FP #RA #TP #FP
RAUR(BWA) 312,949 284,796 28,153 658,289 629,733 28,556 2,222,453 2,197,995 24,458
RAUR(Bowtie2) 632,552 519,586 112,966 388,654 293,101 95,553 593,629 532,641 60,988
  1. #RA is the number of confidently re-aligned reads with mapping quality not less than 10, #TP is the number of confidently and correctly re-aligned reads, and #FP is the number of confidently but incorrectly re-aligned reads.