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Table 3 The number of TP (true positive), and FP (false positive) in the re-aligned reads from single-end simulated datasets.

From: Re-alignment of the unmapped reads with base quality score

 

50-bp

75-bp

100-bp

 

#RA

#TP

#FP

#RA

#TP

#FP

#RA

#TP

#FP

RAUR(BWA)

312,949

284,796

28,153

658,289

629,733

28,556

2,222,453

2,197,995

24,458

RAUR(Bowtie2)

632,552

519,586

112,966

388,654

293,101

95,553

593,629

532,641

60,988

  1. #RA is the number of confidently re-aligned reads with mapping quality not less than 10, #TP is the number of confidently and correctly re-aligned reads, and #FP is the number of confidently but incorrectly re-aligned reads.