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Table 4 The number of TP (true positive), and FP (false positive) in the re-aligned reads from paired-end simulated datasets.

From: Re-alignment of the unmapped reads with base quality score

 

50-bp

75-bp

100-bp

 

#RA

#TP

#FP

#RA

#TP

#FP

#RA

#TP

#FP

RAUR(BWA)

57,206

53,440

3,766

79,892

77,913

1,979

719,859

709,445

10,414

RAUR(Bowtie2)

123,759

108,171

15,588

138,273

126,500

11,773

223,491

209,981

13,510

  1. #RA is the number of confidently re-aligned reads with mapping quality not less than 10, #TP is the number of confidently and correctly re-aligned reads, and #FP is the number of confidently but incorrectly re-aligned reads.