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Table 4 The number of TP (true positive), and FP (false positive) in the re-aligned reads from paired-end simulated datasets.

From: Re-alignment of the unmapped reads with base quality score

  50-bp 75-bp 100-bp
  #RA #TP #FP #RA #TP #FP #RA #TP #FP
RAUR(BWA) 57,206 53,440 3,766 79,892 77,913 1,979 719,859 709,445 10,414
RAUR(Bowtie2) 123,759 108,171 15,588 138,273 126,500 11,773 223,491 209,981 13,510
  1. #RA is the number of confidently re-aligned reads with mapping quality not less than 10, #TP is the number of confidently and correctly re-aligned reads, and #FP is the number of confidently but incorrectly re-aligned reads.