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Table 7 The alignment rate and precision of each alignment method on paired-end real data with different read length.

From: Re-alignment of the unmapped reads with base quality score

 

Alignment Rate

 

ERR007641(51 bp)

SRR019044(76 bp)

ERR050728(90 bp)

BWA

82.7438

80.9078

95.7637

BWA(mem)

-

82.3725

96.1319

RAUR(BWA)

84.9410

85.8255

96.0608

Bowtie2

80.1309

79.8907

94.0414

Bowtie2(local)

-

87.4895

96.3645

RAUR(Bowtie2)

82.7563

86.2557

94.4253

  1. There are 2,977,726 pairs reads with length 51-bp in ERR007641, 9,661,679 pairs with length 76-bp in SRR019044, and 676,633 pairs with length 90-bp in ERR050728.
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BMC Bioinformatics

ISSN: 1471-2105

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