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Table 7 The alignment rate and precision of each alignment method on paired-end real data with different read length.

From: Re-alignment of the unmapped reads with base quality score

  Alignment Rate
  ERR007641(51 bp) SRR019044(76 bp) ERR050728(90 bp)
BWA 82.7438 80.9078 95.7637
BWA(mem) - 82.3725 96.1319
RAUR(BWA) 84.9410 85.8255 96.0608
Bowtie2 80.1309 79.8907 94.0414
Bowtie2(local) - 87.4895 96.3645
RAUR(Bowtie2) 82.7563 86.2557 94.4253
  1. There are 2,977,726 pairs reads with length 51-bp in ERR007641, 9,661,679 pairs with length 76-bp in SRR019044, and 676,633 pairs with length 90-bp in ERR050728.