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Table 1 MICA and SOAP3-dp seeding details.

From: MICA: A fast short-read aligner that takes full advantage of Many Integrated Core Architecture (MIC)

MICA:

Round

Seed Length

Seed Overlap

Seed # Limit

Round 0

140

0

1,000

Round 1

80

0

1,000

Round 2

46

0

100

SOAP3-dp DP module:

Round 1

28

20

100

Round 2

32

28

1,000

  1. "Seed Overlap" means the maximum overlap between two seeds when extracting seeds from a read.
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BMC Bioinformatics

ISSN: 1471-2105

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