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Table 2 Performance of MICA, SOAP3-dp and BWA-MEM on experimental data.

From: MICA: A fast short-read aligner that takes full advantage of Many Integrated Core Architecture (MIC)

Dataset

Volume (Gbp)

# of Read Pairs (M)

Fold

MICA

SOAP3-dp

BWA-MEM

    

1 card

2 cards

2 cards

scale-up

3 cards

3 cards scale-up

Properly paired

1 card

Properly paired

6 cores

Properly paired

PE150

232.15

773.83

77.38

20,919 s

(5.81 hr)

10,618 s

(2.95 hr)

1.97x

7,183 s

(2.00 hr)

2.91x

95.48%

25,878 s

(7.19 hr)

95.01%

101,466 s

(28.19 hr)

92.32%

PE100

148.43

742.16

49.48

15,879 s

(4.41 hr)

8,093 s

(2.25 hr)

1.96x

5,453 s

(1.51 hr)

2.91x

97.23%

17,982 s

(5.00 hr)

97.08%

53,832 s

(14.95 hr)

95.74%