From: MICA: A fast short-read aligner that takes full advantage of Many Integrated Core Architecture (MIC)
Dataset | Volume (Gbp) | # of Read Pairs (M) | Fold | MICA | SOAP3-dp | BWA-MEM | |||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
 |  |  |  | 1 card | 2 cards | 2 cards scale-up | 3 cards | 3 cards scale-up | Properly paired | 1 card | Properly paired | 6 cores | Properly paired |
PE150 | 232.15 | 773.83 | 77.38 | 20,919 s (5.81 hr) | 10,618 s (2.95 hr) | 1.97x | 7,183 s (2.00 hr) | 2.91x | 95.48% | 25,878 s (7.19 hr) | 95.01% | 101,466 s (28.19 hr) | 92.32% |
PE100 | 148.43 | 742.16 | 49.48 | 15,879 s (4.41 hr) | 8,093 s (2.25 hr) | 1.96x | 5,453 s (1.51 hr) | 2.91x | 97.23% | 17,982 s (5.00 hr) | 97.08% | 53,832 s (14.95 hr) | 95.74% |