Figure 2
From: Fast randomized approximate string matching with succinct hash data structures
Results on 5M 100 bp single-end reads simulated using the tool SimSeq (Vitis Vinifera genome) These experiments allowed us to judge how the presence of reliable base qualities affected the quality-aware strategies of Bowtie and BW-ERNE. The left plot shows that BW-ERNE is able to exploit at best the presence of reliable base qualities: our tool was several times faster than the other tools, while at the same time correctly aligning the highest number of reads (together with ERNE).