A study of quality measures for protein threading models

BMC Bioinformatics

Table I Description of measures.

Name	CASP-name	Type	Measure	Reference
Murzin	-	Manual	-	[3]
crn	CRN	Global	Å/N	[20]
arms	ARms	Global	Å	[15]
cspc	CSpc	Global	%	[15]
csnc	CSns	Global	%	[15]
ccrct	CCrct	Global	N	[15]
GDT	GDT TS	Alignment dependent	S(N)	[20]
MaxSub	-	Alignment dependent	S(Å,N)	[22]
LGscore	-	Alignment dependent	S(Å,N)	this work
S	-	Alignment dependent	S(Å,N)	this work
sf0	sf0	Alignment independent	N	[21]
sf4	sf0+sf4	Alignment independent	N	[21]
align	ALIGN A4 P	Alignment independent	%	[20]
LGA	-	Alignment independent	S(Å,N)	this work
eqr1	eqr	Alignment independent	N	[21]
LGscore2	-	Alignment independent	S(Å,N)	this work
acrct	ACrct	Template based	N	[15]
aspc	ASpc	Template based	%	[15]
asp4	ASp4	Template based	%	[15]
covr	Covr	Template based	%	[15]
sclen	SClen	Template based	%	[15]

Å = Rmsd in Ångstrm. N = Number of residues. % = Fraction of residues. S(N) = Score dependent on number of residues. S(Å,N) = Score dependent on quality and number of residues.

ISSN: 1471-2105