Table 4 Effects of using only partial sequences during the Grouping step.
From: FastGroup: A program to dereplicate libraries of 16S rDNA sequences
Matching Direction | % of Sequence Used | # of Groups | Analysis Time (~min) |
|---|---|---|---|
5' | 100 | 54 | 8 |
5' | 90 | 45 | 1 |
5' | 80 | 44 | <1 |
3' | 100 | 48 | 4 |
3' | 90 | 37 | 1 |
3' | 80 | 28 | <1 |