Number/Type of Nucleotides | Structural Element | ||
---|---|---|---|
 | Short Name | High | Low |
single nuc | total | Â | Â |
 | paired (helix) | G (36.57%) | A (14.46%) |
 | 5' helix end | G (46.23%) | U(13.52%) |
 | 3' helix end | C (38.07%) | A (10.57%) |
 | 5' loop end | G (37.06%) | C (10.33%) |
adjacent nucs | total | GG (9.863%) | UU (4.093%) |
 | in helix | GG (14.06%) | AA (1.981%) |
 | 3'helix 5'loop | CG (14.75%) | UC(1.495%) |
 | loop/helix ratio | AA (5.67934) | CC (.112825) |
base pairs | total | GC/CG (28.29%) | CU/UC (0.1351%) |
 | 5'helix end | GC (38.76%) | UC (0.09088%) |
 | 3'helix end | CG (38.77%) | CU (0.09089%) |
 |  | Highest | |
three nucs | total | GGG (3.0%), GAA (2.6%), AAG (2.6%), GGA (2.5%), AGG (2.4%) | Â |
 | 000 | GAA (7.5%), AAA (6.7%), UAA (5.2%) |  |
 | 011 | AGC (9.3%), AGG (8.8%) |  |
 | 100 | CGA (7.6%), UGA (5.8%), GGA (5.3%) |  |
 | 110 | GCG (6.9%), GGG (4.8%), GGA (4.7%) |  |
 | 001 | AAG (14.4%), AAC (6.9%), GAG (5.4%) |  |
 | 101 | CAG (7.2%) |  |