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Table 2 Performance of SVMHC for different HLA alleles, using MHCPEP- or SYFPEITHI-data.

From: Prediction of MHC class I binding peptides, using SVMHC

MHC Length Size Mc Kernel
Predictions using MHCPEP
HLA-A1 9 28 0.95 lin
HLA-A*1101 9 40 0.74 poly
HLA-A11 9 46 0.75 rbf
HLA-A11 10 21 0.59 poly
HLA-A2 9 118 0.76 poly
HLA-A2 10 35 0.65 poly
HLA-A*2402 9 73 0.90 poly
HLA-A3 9 73 0.76 rbf
HLA-A*0201 9 184 0.73 rbf
HLA-A*0201 10 96 0.78 poly
HLA-A*3301 9 32 0.72 lin
HLA-A*0301 9 38 0.72 rbf
HLA-A*0301 10 32 0.77 lin
HLA-A31 9 39 0.79 poly
HLA-A*6801 9 42 0.84 poly
HLA-B7 9 32 0.95 lin
HLA-B8 9 26 0.77 poly
HLA-B*2705 9 41 0.93 lin
HLA-B*3501 9 67 0.93 lin
HLA-B*3501 10 34 0.96 poly
HLA-B35 9 23 0.71 lin
HLA-B*2703 9 22 0.90 lin
HLA-B*5301 9 41 0.95 lin
HLA-B27 9 34 0.91 rbf
HLA-B*2706 9 20 0.93 lin
HLA-B51 9 67 0.82 poly
HLA-B*5102 9 29 0.79 poly
HLA-B*0702 9 52 0.96 poly
HLA-B*5103 9 29 0.84 rbf
HLA-B*5401 9 42 0.98 lin
HLA-B*5101 9 35 0.89 lin
Predictions using SYFPEITHI
HLA-A*0201 9 113 0.78 rbf
HLA-A*0201 10 40 0.70 poly
HLA-A1 9 28 0.96 lin
HLA-A3 9 73 0.80 lin
HLA-B*8 8 14 0.89 lin
HLA-B*8 9 25 0.79 lin
HLA-B*2705 9 29 1.00 lin
HLA-B7 9 23 0.93 lin
  1. The first column explains shows the HLA allele, the second the length of the binding peptides, the third the number of binders included in the training set, the fourth the performance as measured by the Matthews correlation coefficient. The final column shows what type of kernel was used in the Support Vector Machine.