Skip to main content

Table 1 Selected genes grouped to cluster 1,7,9,10,11 of K-means clustering of SOM. Full list can be found in the web supplement [13].

From: Clustering of the SOM easily reveals distinct gene expression patterns: results of a reanalysis of lymphoma study

Cluster No.

Clone ID

Gene Description

Cluster 1

100

Ki67 (long type)

 

1287099

Survivin = apoptosis inhibitor = effector cell protease EPR-1

 

108294, 1287528

XRCC9 = DNA repair protein

 

950690, 824709

Cyclin A

 

563130, 824060

Cyclin B1

 

1288839, 325880

Tubulin-beta

 

1240822, 588637

Actin = cytoskeletal gamma-actin

 

683084

Cyclin E2

 

1356512

Similar to MCM2 = DNA replication licensing factor

 

703757

MPP1 = Putative M phase phosphoprotein 1

 

1240595

Tubulin-alpha

 

1341540, 781047

BUB1 = putative mitotic checkpoint protein ser/thr kinase

Cluster 7

789182

PCNA = proliferating cell nuclear antigen

 

1288183, 235938

BAK = BCL-2 family member

 

80592

Syndecan-1

 

469256, 1322301

Bag-1 = Bcl-2 interacting anti-apoptotic protein = RAP46 = Glucocorticoid receptor-associated protein

 

525540

BCL-3

 

1338456, 364941

C-myc binding protein

 

784012

40S ribosomal protein S21

 

324144

Ribosomal protein S29

 

1087015, 1240788

Ribosomal protein S9

 

510395

Ribosomal protein S16

 

272185

Ribosomal protein L27

 

1335421

Similar to ribosomal protein L37a

 

1368302

Ribosomal protein L32

Cluster 9

46778

BCL-XL

 

814478, 1353675

A1 = Bfl-1 = GRs = Bcl-2 related protein

 

270770, 1272196

IRF-4 = LSIRF = Mum1 = homologue of Pip = Lymphoid-specific interferon regulatory factor = Multiple myeloma oncogene 1

 

1290353

Similar to TREB and X box binding protein 1

 

145093

MCL1 = myeloid cell differentiation protein

Cluster 10

701606, 1286850, 200814

CD10 = CALLA = Neprilysin = enkepalinase

 

1337241, 306139

BCL-7A

 

1340526, 712395

BCL-6

 

824476, 95093, 1350545

Spi-B transcription factor

 

1335782, 13194072, 1338245

Oct-2 = lymphoid-specific octamer binding transcription factor = POU

 

278808

Spi-1 = PU.1 = ets family transcription factor

 

50214

CD86 = B7-2 = CD28 and CTLA-4 counter-receptor 2

Cluster 11

753794

BLC = BCA-1 = B lymphocyte chemoattractant BLC = CXC chemokine

 

1326652

CD2

 

245959

SDF-1 = Stromal cell-derived factor 1 = chemokine

 

159946

CD14 = monocyte differentiation antigen

 

1130062

CD3E antigen, epsilon polypeptide

 

258802, 470615

CD64 = high affinity immunogobulin gamma FC receptor I A form precursor = FC-gamma

 

377560

CD3 delta = T cell surface glycoprotein

 

505569

T cell receptor beta chain

 

23435, 1306024

CD11C = leukocyte adhesion protein p150,95 alpha subunit = integrin alpha-X

 

1219244, 57, 1071581

RANTES = chemokine

 

472180

S100 calcium binding protein A4 = Placental calcium binding protein = Calvasculin

 

701290

C-C chemokine receptor 5 == CC CK5

 

47509

Major histocompatibility complex, class II, DN alpha