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Table 2 Significant words related to the PAC motif.

From: Correlating overrepresented upstream motifs to gene expression: a computational approach to regulatory element discovery in eukaryotes

word

genes

timepoints

score

  

1

2

3

4

5

6

7

 

GATGAG

24

-

-

-

-6.70

-

-

-

1.00

GATGAGAT

35

-

-

-

-8.20

-6.26

-6.18

-7.86

0.94

GATGAGA

26

-

-

-

-7.06

-

-

-6.64

0.93

GAGATGAG

36

-

-

-

-6.96

-

-

-6.50

0.92

AGATGAG

33

-

-

-

-6.17

-

-

-6.44

0.91

GAGATGA

42

-

-

-

-6.20

-

-

-

0.83

ATGAGATG

32

-

-

-

-6.96

-

-

-6.33

0.80

GAGATG

31

-

-

-

-6.42

-

-

-

0.75

TGAGATG

47

-

-

-

-6.26

-

-

-6.10

0.70

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BMC Bioinformatics

ISSN: 1471-2105

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